GSL path issue

[QCaudron]

Using brew : after unlinking gsl in brew, I installed it again using your instructions ( "brew install jansson zmq gsl node" ), and have a linking issue on OSX Maverick, during "npm install -g ssm" :

ssm@0.5.7 install /usr/local/lib/node_modules/ssm (cd src/C && make && make install && make clean)

gcc -std=gnu99 -Wall -O3 -DGSL_RANGE_CHECK_OFF -I kalman -I pmcmc -I simul -I mif -I simplex -I core -o core/alloc_c.o -c core/alloc_c.c In file included from core/alloc_c.c:19: core/ssm.h:36:10: fatal error: 'gsl/gsl_math.h' file not found

include <gsl/gsl_math.h>

     ^

1 error generated. make: *\ [core/alloc_c.o] Error 1 npm ERR! weird error 2 npm ERR! not ok code 0

By default, installing GSL via brew will not link correctly. I'm still looking for the correct linking path, just thought I'd flag this first.

[sballesteros]

You are having an issue with homebrew here not ssm. You can try brew uninstall formula_name --force and reinstalling after. ssm does nothing special. The Makefile is here but you can also try to compile some test code of your own. brew doctor can help too.

[QCaudron]

Didn't think it was worth opening a new issue for this, but that I should flag it. npm test is failing, looking for a lib that isn't found :

> ssm@0.5.7 test /Users/qcaudron/Downloads/ssm-master
> (cd src && python test_Cmodel.py && python test_Ccoder.py) && (cd tests && make test && make clean) && ./node_modules/.bin/mocha

.................
----------------------------------------------------------------------
Ran 17 tests in 0.113s

OK
.....
----------------------------------------------------------------------
Ran 5 tests in 0.690s

OK
test -d /Users/qcaudron/Downloads/ssm-master/tests/resources/ || mkdir -p /Users/qcaudron/Downloads/ssm-master/tests/resources/; \
        ../bin/ssm install ../examples/foo/package.json -v -n --src; \
        cp ../examples/foo/bin/.data.json /Users/qcaudron/Downloads/ssm-master/tests/resources/; \
        cp ../examples/foo//package.json /Users/qcaudron/Downloads/ssm-master/tests/resources/

module.js:340
    throw err;
          ^
Error: Cannot find module 'commander'
    at Function.Module._resolveFilename (module.js:338:15)
    at Function.Module._load (module.js:280:25)
    at Module.require (module.js:364:17)
    at require (module.js:380:17)
    at Object.<anonymous> (/Users/qcaudron/Downloads/ssm-master/bin/ssm:3:15)
    at Module._compile (module.js:456:26)
    at Object.Module._extensions..js (module.js:474:10)
    at Module.load (module.js:356:32)
    at Function.Module._load (module.js:312:12)
    at Function.Module.runMain (module.js:497:10)
cp: ../examples/foo/bin/.data.json: No such file or directory
clang -g -I.. -I. -I /Users/qcaudron/.ssm/include -Wall -DCLAR_FIXTURE_PATH=\"/Users/qcaudron/Downloads/ssm-master/tests/resources/\" -o ssmtest clar.c main.o parameters.o states.o observed.o iterators.o nav.o inputs.o data.o fitness.o calc.o -L../examples/foo/bin/C/templates -L /Users/qcaudron/.ssm/lib -lssm -lssmtpl -lssm -lm -lgsl -lgslcblas -ljansson -lzmq
ld: warning: directory not found for option '-L../examples/foo/bin/C/templates'
ld: library not found for -lssmtpl
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [ssmtest] Error 1
npm ERR! weird error 2
npm ERR! not ok code 0

[sballesteros]

to run the tests you need to

1. clone the repo from github
2. at the root of the repo run npm install
3. now, you can run the tests

[QCaudron]

Will this cause any issues with the ssm that's installed through npm install -g ?

Quentin CAUDRON

On 10 December 2013 09:42, Sebastien Ballesteros notifications@github.comwrote:

to run the tests you need to

1. clone the repo from github
2. at the root of the repo run npm install
3. now, you can run the tests

— Reply to this email directly or view it on GitHubhttps://github.com/standard-analytics/ssm/issues/11#issuecomment-30232222 .

[sballesteros]

no. The tests are useful if you want to contribute to the project. From an user perspective it's noise.