Git Backup corrupted on every backup (triggered by boot.)

jwhite commented 1 month ago

Code of Conduct

[X] I promise that i have used markdown syntax to make the code more readable which helps to fix the problem and that I have tested the --fix command mentioned above without success.

What happened

First backup triggered normally from the shell works.

Subsequent backups fail with this error :

error: object file .git/objects/16/f3809f603034562731dc0eb244ad696acbf125 is empty fatal: loose object 16f3809f603034562731dc0eb244ad696acbf125 (stored in .git/objects/16/f3809f603034562731dc0eb244ad696acbf125) is corrupt

Subsequent backups don't occur with no warning to the user.

This is endlessly repeatable with a long history of occurring.

~/klipper-backup/script.sh --fix Works temporarily, as it deletes the backup folder.

What did you expect to happen

Backups to occur.

How to reproduce

Installed with all backup options available, but this appears to be using the backup on boot when it fails.

Have uninstalled and reinstalled repeatedly.

Debug

● Checking for installed dependencies Done!

Klipper-Backup is up to date

------------DEBUG:------------
Command: cd KAMP
------------------------------

------------DEBUG:------------
github_token=****************
github_username=jwhite
github_repository=Voron-klipper_config
branch_name="main"
commit_username="pi"
commit_email="pi@voron-12800de"

# Backup paths
#  Note: script.sh starts its search in $HOME which is /home/{username}/
# The array accepts folders or files like the following example
#
#  backupPaths=( \
#  "printer_data/config/*" \
#  "printer_data/config/printer.cfg" \
#  )
#
# Using the above example the script will search for /home/{username}/printer_data/config/* and /home/{username}/printer_data/config/printer.cfg
# When backing up a folder you should always have /* at the end of the path so that files insde the folder are properly searched

backupPaths=( \
 "printer_data/config/*" \
)

# Array of strings in .gitignore pattern git format https://git-scm.com/docs/gitignore#_pattern_format for files that should not be uploaded to the remote repo
# New additions must be enclosed in double quotes and should follow the pattern format as noted in the above link

exclude=( \
 "*.swp" \
 "*.tmp" \
 "printer-[0-9]*_[0-9]*.cfg" \
 "*.bak" \
 "*.bkp" \
 "*.csv" \
 "*.zip" \
)
------------------------------

------------DEBUG:------------
curl: (22) The requested URL returned error: 404
Error: no GitHub repo jwhite/Voron-klipper_config found (maybe private)
------------------------------

------------DEBUG:------------
$HOME: /home/pi
------------------------------

------------DEBUG:------------
$backup_path: /home/pi/config_backup

Content of $backup_path:
total 16
drwxr-xr-x  3 pi pi 4096 Sep 16 09:03 .
drwx--x--x 34 pi pi 4096 Sep 14 16:34 ..
drwxr-xr-x  8 pi pi 4096 Sep 16 09:03 .git
-rw-r--r--  1 pi pi  181 Sep 14 16:21 README.md
------------------------------

------------DEBUG:------------
$backup_path/.git/config:

[init]
    defaultBranch = main
[core]
        repositoryformatversion = 0
        filemode = true
        bare = false
        logallrefupdates = true
[user]
        name = pi
        email = pi@voron-12800de
[remote "origin"]
        url = https://********@github.com/jwhite/Voron-klipper_config.git
        fetch = +refs/heads/*:refs/remotes/origin/*
[branch "main"]
        remote = origin
        merge = refs/heads/main
------------------------------

error: object file .git/objects/16/f3809f603034562731dc0eb244ad696acbf125 is empty
fatal: loose object 16f3809f603034562731dc0eb244ad696acbf125 (stored in .git/objects/16/f3809f603034562731dc0eb244ad696acbf125) is corrupt
Skipping symbolic link: printer_data/config/fluidd.cfg
Skipping symbolic link: printer_data/config/KAMP
skipping non-regular file "printer_data/config/mmu/base/mmu_cut_tip.cfg"
skipping non-regular file "printer_data/config/mmu/base/mmu_form_tip.cfg"
skipping non-regular file "printer_data/config/mmu/base/mmu_leds.cfg"
skipping non-regular file "printer_data/config/mmu/base/mmu_sequence.cfg"
skipping non-regular file "printer_data/config/mmu/base/mmu_software.cfg"
skipping non-regular file "printer_data/config/mmu/base/mmu_state.cfg"
skipping non-regular file "printer_data/config/mmu/optional/client_macros.cfg"
skipping non-regular file "printer_data/config/mmu/optional/mmu_ercf_compat.cfg"
skipping non-regular file "printer_data/config/mmu/optional/mmu_menu.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/base/mmu_cut_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/base/mmu_form_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/base/mmu_leds.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/base/mmu_sequence.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/base/mmu_software.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/base/mmu_state.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/optional/client_macros.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/optional/mmu_ercf_compat.cfg"
skipping non-regular file "printer_data/config/mmu-20240826_102122/optional/mmu_menu.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/base/mmu_cut_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/base/mmu_form_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/base/mmu_leds.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/base/mmu_sequence.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/base/mmu_software.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/base/mmu_state.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/optional/client_macros.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/optional/mmu_ercf_compat.cfg"
skipping non-regular file "printer_data/config/mmu-20240902_174632/optional/mmu_menu.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/base/mmu_cut_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/base/mmu_form_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/base/mmu_leds.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/base/mmu_sequence.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/base/mmu_software.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/base/mmu_state.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/optional/client_macros.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/optional/mmu_ercf_compat.cfg"
skipping non-regular file "printer_data/config/mmu-20240906_113652/optional/mmu_menu.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/base/mmu_cut_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/base/mmu_form_tip.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/base/mmu_leds.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/base/mmu_sequence.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/base/mmu_software.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/base/mmu_state.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/optional/client_macros.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/optional/mmu_ercf_compat.cfg"
skipping non-regular file "printer_data/config/mmu-20240914_155223/optional/mmu_menu.cfg"

------------DEBUG:------------
Content of $backup_path after rsync:
total 20
drwxr-xr-x  4 pi pi 4096 Sep 16 09:05 .
drwx--x--x 34 pi pi 4096 Sep 14 16:34 ..
drwxr-xr-x  8 pi pi 4096 Sep 16 09:05 .git
drwxr-xr-x  3 pi pi 4096 Sep 16 09:05 printer_data
-rw-r--r--  1 pi pi  181 Sep 14 16:21 README.md
------------------------------

error: object file .git/objects/16/f3809f603034562731dc0eb244ad696acbf125 is empty
error: object file .git/objects/16/f3809f603034562731dc0eb244ad696acbf125 is empty
fatal: loose object 16f3809f603034562731dc0eb244ad696acbf125 (stored in .git/objects/16/f3809f603034562731dc0eb244ad696acbf125) is corrupt
error: object file .git/objects/16/f3809f603034562731dc0eb244ad696acbf125 is empty
error: object file .git/objects/16/f3809f603034562731dc0eb244ad696acbf125 is empty
fatal: loose object 16f3809f603034562731dc0eb244ad696acbf125 (stored in .git/objects/16/f3809f603034562731dc0eb244ad696acbf125) is corrupt
branch 'main' set up to track 'origin/main'.
Everything up-to-date

Additional information

No response

Tylerjet commented 1 month ago

This issue is likely due to your MMU files that are attempting to be backed up but are symbolic links, when you look at your backup repo is there a folder that looks to be hyperlinked to a location that doesn't exist?

When the script tries to pull the repo back down it is probably viewing those locations as empty/corrupt as they have no data.

Could you try what Staubgeborener suggests here: https://github.com/Staubgeborener/Klipper-Backup/issues/121#issuecomment-2345459135 and see if you get the same errors with the files ignored.

I would make sure to use a new empty repo as well for the test.

Staubgeborener commented 1 month ago

This is one of the best examples why I add this "I promise that i use markdown syntax" checkbox. Please don't just check this box and that's it - use markdown to make this stuff readable.

jwhite commented 1 month ago

This is one of the best examples why I add this "I promise that i use markdown syntax" checkbox. Please don't just check this box and that's it - use markdown to make this stuff readable.

You should specify "Use markdown when including logs as the introduce special characters."

Tylerjet commented 1 month ago

Just found out that there is actually an attribute that can be set to just render it into a codeblock automagically, so will make that change later.

Staubgeborener commented 1 month ago

This is one of the best examples why I add this "I promise that i use markdown syntax" checkbox. Please don't just check this box and that's it - use markdown to make this stuff readable.

You should specify "Use markdown when including logs as the introduce special characters."

No, i would love to see markdown backticks `` everywhere which is code related, including snippets, as it increases readability for everything - not just for log outputs due to special characters. That's just the cherry on top. But like @Tylerjet already told, we know rendering markdown automatically in debug output. Btw what about your original problem, have you found or tested anything yet?

github-actions[bot] commented 1 month ago

This issue is stale because it has been open for 14 days with no activity.

github-actions[bot] commented 3 weeks ago

This issue was closed because it has been inactive for 14 days since being marked as stale.

Staubgeborener / Klipper-Backup