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StephenHwang / MEMO

MEMO: MEM-based pangenome indexing for k-mer queries
MIT License
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Please consider using argparse instead of Bash scripts for command line parsing #1

Closed marade closed 3 months ago

marade commented 4 months ago

The rest of the programs are Python, so why not Python for this? It's also more flexible and straightforward.

https://docs.python.org/3/library/argparse.html

StephenHwang commented 3 months ago

A good portion of MEMO uses bash, so I opted for bash to parse flags. Argparse is already used for the python portions.

marade commented 3 months ago

But why use Bash at all?