The following build errors showed up while running ./install.sh
Building wheel for h5py (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-mqlylpoo/h5py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-mqlylpoo/h5py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ny2or2_0
cwd: /tmp/pip-install-mqlylpoo/h5py/
Complete output (97 lines):
Running from numpy source directory.
/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py:461: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
run_build = parse_setuppy_commands()
Cythonizing sources
Processing numpy/random/_bounded_integers.pxd.in
Processing numpy/random/_bounded_integers.pyx.in
Traceback (most recent call last):
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 61, in process_pyx
from Cython.Compiler.Version import version as cython_version
ModuleNotFoundError: No module named 'Cython'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 238, in <module>
main()
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 234, in main
find_process_files(root_dir)
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 225, in find_process_files
process(root_dir, fromfile, tofile, function, hash_db)
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 191, in process
processor_function(fromfile, tofile)
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 94, in process_tempita_pyx
process_pyx(pyxfile, tofile)
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/tools/cythonize.py", line 66, in process_pyx
raise OSError('Cython needs to be installed in Python as a module')
OSError: Cython needs to be installed in Python as a module
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 154, in save_modules
yield saved
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 250, in run_setup
_execfile(setup_script, ns)
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 45, in _execfile
exec(code, globals, locals)
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py", line 488, in <module>
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py", line 469, in setup_package
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py", line 275, in generate_cython
RuntimeError: Running cythonize failed!
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-mqlylpoo/h5py/setup.py", line 159, in <module>
cmdclass = CMDCLASS,
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 128, in setup
_install_setup_requires(attrs)
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 123, in _install_setup_requires
dist.fetch_build_eggs(dist.setup_requires)
File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 513, in fetch_build_eggs
replace_conflicting=True,
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 774, in resolve
replace_conflicting=replace_conflicting
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1057, in best_match
return self.obtain(req, installer)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1069, in obtain
return installer(requirement)
File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 580, in fetch_build_egg
return cmd.easy_install(req)
File "/usr/lib/python3/dist-packages/setuptools/command/easy_install.py", line 698, in easy_install
return self.install_item(spec, dist.location, tmpdir, deps)
File "/usr/lib/python3/dist-packages/setuptools/command/easy_install.py", line 724, in install_item
dists = self.install_eggs(spec, download, tmpdir)
File "/usr/lib/python3/dist-packages/setuptools/command/easy_install.py", line 909, in install_eggs
return self.build_and_install(setup_script, setup_base)
File "/usr/lib/python3/dist-packages/setuptools/command/easy_install.py", line 1177, in build_and_install
self.run_setup(setup_script, setup_base, args)
File "/usr/lib/python3/dist-packages/setuptools/command/easy_install.py", line 1163, in run_setup
run_setup(setup_script, args)
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 253, in run_setup
raise
File "/usr/lib/python3.6/contextlib.py", line 99, in __exit__
self.gen.throw(type, value, traceback)
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/usr/lib/python3.6/contextlib.py", line 99, in __exit__
self.gen.throw(type, value, traceback)
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 166, in save_modules
saved_exc.resume()
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 141, in resume
six.reraise(type, exc, self._tb)
File "/usr/lib/python3/dist-packages/setuptools/_vendor/six.py", line 685, in reraise
raise value.with_traceback(tb)
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 154, in save_modules
yield saved
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 250, in run_setup
_execfile(setup_script, ns)
File "/usr/lib/python3/dist-packages/setuptools/sandbox.py", line 45, in _execfile
exec(code, globals, locals)
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py", line 488, in <module>
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py", line 469, in setup_package
File "/tmp/easy_install-ke5sf8vr/numpy-1.18.2/setup.py", line 275, in generate_cython
RuntimeError: Running cythonize failed!
----------------------------------------
ERROR: Failed building wheel for h5py
and a second build error:
Failed to build h5py
ERROR: uff 0.6.5 has requirement protobuf>=3.3.0, but you'll have protobuf 3.0.0 which is incompatible.
The following build errors showed up while running ./install.sh
and a second build error: