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Steven-N-Hart / dicom_wsi

Converts whole slide images to DICOM format
https://dicom-wsi.readthedocs.io
MIT License
17 stars 8 forks source link

Trouble setting it up and testing the examples #26

Open catweis opened 3 months ago

catweis commented 3 months ago

First of all, thank you very much for this repo. Such a tool is highly needed. Unfortunately, I think I am missing something with the installation. First, I installed it, or, rather, all pre-requests, according to the installation guide on https://dicom-wsi.readthedocs.io/en/latest/installation.html. The last step is installing dicom_wsi itself via pip? However, the dicom_wsi that can be then imported in Python does not have a function dicom_wsi. Second, I tried to work directly on the repo, which I downloaded. However, there, I need to add some lines to the init file to find dicom_wsi.dicom_wsi. And now, for the example https://dicom-wsi.readthedocs.io/en/latest/gettingstarted.html from the documentation, many things need to be corrected? That can not be the correct approach. The example from the repo (https://github.com/Steven-N-Hart/dicom_wsi) seems to have a point where a / should be. May I ask if there is any easy code to test the installation? Many thanks in forward for your reply.

Steven-N-Hart commented 3 months ago

Can you tell me a little more about your configuration? How did you install it? What happens when you do this:

pip install dicom_wsi python -m dicom_wsi.dicom_wsi cli.py

catweis commented 3 months ago

Thank you for your reply. If I run “pip install dicom_wsi” there is no error. All is installed. And running "python -m dicom_wsi.dicom_wsi cli.py” does not show anything. Neither an error or anything else.

On 8 Apr 2024, at 16:05, Steven N Hart @.***> wrote:

Can you tell me a little more about your configuration? How did you install it? What happens when you do this:

pip install dicom_wsi python -m dicom_wsi.dicom_wsi cli.py

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