Hi, I'm getting some errors with VCF miner and version 4.2 which is the format our recent files has been delivered in. Specifically this error:
WARNING: The following header line appears to have a problem: ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> Invalid value for Number=R WARNING: The following header line appears to have a problem: ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> Invalid value for Number=R WARNING: The following header line appears to have a problem: ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele">
It looks like it's the new 4.2 format that has introduced R as a number. Is there a fix for this?
Hi, I'm getting some errors with VCF miner and version 4.2 which is the format our recent files has been delivered in. Specifically this error:
WARNING: The following header line appears to have a problem: ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> Invalid value for Number=R WARNING: The following header line appears to have a problem: ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> Invalid value for Number=R WARNING: The following header line appears to have a problem: ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele">
It looks like it's the new 4.2 format that has introduced R as a number. Is there a fix for this?
Best
Nicolai