Steven-N-Hart / vcf-miner

VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
MIT License
37 stars 11 forks source link

docker - tomcat accessible but vcf-miner cannot be found #3

Closed colindaven closed 7 years ago

colindaven commented 7 years ago

Hi,

I am using the docker version on ubuntu 16.04 64 bit.

I can access the tomcat server via a webbrowser but cannot access vcf-miner, no matter how long I wait.

How can I diagnose if the vcf-miner app is actually starting within the docker container correctly ?

I get a tomcat webpage

http://myip:7777/

I get a tomcat 404 vcf-miner

http://myip:7777/vcf-miner/

HTTP Status 404 - /vcf-miner/

Any ideas ?

Thanks Colin

preciserobot commented 7 years ago

Same here. Can reproduce on Arch, Ubuntu, and MacOS.

Steven-N-Hart commented 7 years ago

Can you verify you have a mongod instance running in the background?

preciserobot commented 7 years ago

I am running the docker image from your docker hub repo. Mongo is running in the container and the mongoshell is accessible. Tomcat is running and the root address yields the tomcat webpage. Can you confirm this image should work? I rebuilt the image and encounter the same problem. Could be a problem on my side...

colindaven commented 7 years ago

Ditto. I'd say this is a ports problem, as I now have alternative software running on port 8080 (this wasn't there before however).

Can you recommend an alternative port for this command and explain where to make the changes in the docker image (I assume in interactive mode?) ?

Command: docker run -e NO_LDAP=1 -d -p 8888:8000 stevenhart/vcf-miner:latest /home/start.sh

Thanks

Steven-N-Hart commented 7 years ago

Apologies for taking so long, but I am looking into it.

Steven-N-Hart commented 7 years ago

OK. I've updated the README. You should now be able to start it without any problems.

preciserobot commented 7 years ago

I just rebuilt the docker image and the problem still persists. Using the docker image i can access the root page but not vcf-miner (404). Same issue with the provided docker image from docker hub.

Steven-N-Hart commented 7 years ago

can you let me know what commit you are running off of?

Steven-N-Hart commented 7 years ago

OK. I have updated the readme and build specifications. This should resolve your problem. Can you comment when you try it out?