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StevenWingett / FastQ-Screen

Detecting contamination in NGS data and multi-species analysis
https://stevenwingett.github.io/FastQ-Screen/
GNU General Public License v3.0
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Minimap2 aligner support #66

Closed mp15 closed 1 year ago

mp15 commented 1 year ago

This PR adds support for using minimap2 as an aligner.

StevenWingett commented 1 year ago

Hi Martin,

Thanks for your contribution to FastQ Screen. Adding Minimap support is a good idea and something I have been looking to do. I'd like to review your code, but could I ask a small favour first. I always reserve the master branch as the latest release. This means that when people clone FastQ Screen they will be using the latest released version of the software, but not a developmental version. Consequently, I've created a new FastQ Screen branch called minimap. Would you mind forking that branch, adding your code and then creating a pull request. I'll then review the new code.

Many thanks for your interest in FastQ Screen.

Best, Steven

mp15 commented 1 year ago

Closed in favour of #67