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StevenWingett
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HiCUP
Hi-C data processing pipeline
GNU Lesser General Public License v3.0
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Speed up scripts
#102
fys666
opened
2 months ago
1
hicup deduplicator error in read.table function
#101
WeiCSong
opened
6 months ago
2
Fix for cut sites at beginning or end of sequence
#100
mtekman
closed
6 months ago
1
Trimming step before HiCUP?
#99
iagooteroc
closed
7 months ago
1
hicup2homer error in converting HiCPro bam file
#98
Lei-Guo
opened
8 months ago
10
HiCUP Truncater incorrect input
#97
jmtobin257
closed
8 months ago
0
fileNamer error for genome indices
#96
kaileeyoshimura
closed
11 months ago
5
New issue encountered
#95
Nandhininj
closed
1 year ago
1
Add comb_dedup and HiCUP integrity checker scripts to Misc folder
#94
StevenWingett
opened
1 year ago
0
Merge parallel jobs from the same sample?
#93
SalvadorGJ
closed
1 year ago
1
ERROR: The restriction site (re1) needs to be a valid DNA sequence
#92
jyaomda
opened
1 year ago
4
Error encountered while working on HiCUP
#91
Nandhininj
closed
1 year ago
1
How to specify the bowtie2 option
#90
TakatoG
closed
1 year ago
1
add option useindex + test
#89
lldelisle
closed
1 year ago
1
add new option to hicup2juicer + keep read name
#88
lldelisle
closed
1 year ago
3
typo in version
#87
lldelisle
closed
1 year ago
1
Change version
#86
lldelisle
closed
1 year ago
3
Fix/Improve CI
#85
lldelisle
closed
1 year ago
11
Test
#84
lldelisle
closed
1 year ago
0
Post 0.9.0 fixes
#83
lldelisle
closed
1 year ago
6
`scribl_capture_ditag_sorter.pl` seems to be in dos
#82
lldelisle
closed
1 year ago
1
hicup2homer is not executable in v0.9.0
#81
lldelisle
closed
1 year ago
1
Devel
#80
StevenWingett
closed
1 year ago
0
Devel
#79
StevenWingett
closed
1 year ago
0
Devel
#78
StevenWingett
closed
1 year ago
0
create_baitmap_rmap.pl
#77
TakatoG
closed
1 year ago
3
R error?
#76
TakatoG
closed
1 year ago
2
index error
#75
TakatoG
closed
1 year ago
2
How to merge data from multiple lanes or bological replicates
#74
HammadFarooq
closed
1 year ago
1
How to use the outputfile hicup.bam to run 3ddna
#73
Biscuite-wzy
closed
1 year ago
4
Why not use BWA mem as a mapper?
#72
joshuak94
closed
1 year ago
1
Multi-thread option for Hicup filter and deduplicator.
#71
Shubhamverma-bioinfo
closed
1 year ago
1
Improve hicup2juicer
#70
lldelisle
closed
1 year ago
13
what is the difference between hicup.bam and pair.bam? Why not all files will produce hicup.bam?
#69
xsq2022
closed
1 year ago
2
Summary report file
#68
Oksanak22
closed
2 years ago
7
HiCUP error after pairing - Error in read.table/no lines available in input/Could not produced hicup_mapper summary/fail to read the header from "pair.bam"
#67
matteozoia4
closed
2 years ago
6
Error in pairing while running hicup_mapper
#66
Giuseppe1995
closed
2 years ago
2
how to chose --format option while running hicup_mapper
#65
Giuseppe1995
closed
2 years ago
2
Edited documentation
#64
StevenWingett
closed
2 years ago
0
Truncation of 3' Partial Ligation Sequences
#63
StephenRicher
closed
2 years ago
4
Truncation at very start of sequence.
#62
StephenRicher
opened
2 years ago
1
UMIs incorporated into deduplicator
#61
aturocks
closed
2 years ago
26
di-tag parameter
#60
ivyhzau
closed
2 years ago
3
Hicup capture script not working
#59
aturocks
closed
3 years ago
3
hicup_reporter can't run if it detects other previous reports
#58
LaureTomas
closed
3 years ago
5
Tutorial test data not pairing with HiCUP Mapper after bowtie2 alignment
#57
aturocks
closed
3 years ago
3
Add Scribler to the HiCUP Misc folder
#56
StevenWingett
closed
1 year ago
1
Potential Bowtie2 error?
#55
Axolotl233
closed
3 years ago
1
Devel capture
#54
StevenWingett
closed
3 years ago
0
Documentation
#53
StevenWingett
closed
3 years ago
0
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