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StevenWingett / lmb-nextflow

Configuration files and other information regarding the Nextflow setup at the LMB
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Correct STAR index listing in genome_overview.txt #2

Closed StevenWingett closed 1 year ago

StevenWingett commented 2 years ago

The genome download script 'download_genomes.py' needs to give the correct STAR index folder in the output file 'genome_overview.txt'.

e.g. change: star = '/public/genomics/species_references/nextflow/Genome_References/Ensembl/saccharomyces_cerevisiae/R64-1-1/Release_105/STAR_index/'

to

star = '/public/genomics/species_references/nextflow/Genome_References/Ensembl/saccharomyces_cerevisiae/R64-1-1/Release_105/STAR_index/saccharomyces_cerevisiae.R64-1-1.dna.105.STAR_index/'

StevenWingett commented 1 year ago

Fixed in commit: 6ac65a1e145564d364ea3f36d80de83126ed7b48