Closed BryanRumsey closed 1 month ago
The simulation was stopped at t=4875 and this error was raised
t=4875
--------------------------------------------------------------------------- ValueError Traceback (most recent call last) /var/folders/z4/bqpnd_kx7xg3s3c9jtz0pnfh0000gn/T/ipykernel_9812/979225289.py in <module> ----> 1 results2.plot() ~/Documents/GillesPy2/gillespy2/core/results.py in plot(self, index, xaxis_label, xscale, yscale, yaxis_label, style, title, show_title, show_legend, multiple_graphs, included_species_list, save_png, figsize) 406 _plot_iterate(trajectory, included_species_list=included_species_list, show_labels=False) 407 else: --> 408 _plot_iterate(trajectory, included_species_list=included_species_list) 409 410 if show_legend: ~/Documents/GillesPy2/gillespy2/core/results.py in _plot_iterate(self, show_labels, included_species_list) 48 label = "" 49 ---> 50 plt.plot(self.data['time'], self.data[species], label=label, color=line_color) 51 52 /opt/homebrew/lib/python3.9/site-packages/matplotlib/pyplot.py in plot(scalex, scaley, data, *args, **kwargs) 3017 @_copy_docstring_and_deprecators(Axes.plot) 3018 def plot(*args, scalex=True, scaley=True, data=None, **kwargs): -> 3019 return gca().plot( 3020 *args, scalex=scalex, scaley=scaley, 3021 **({"data": data} if data is not None else {}), **kwargs) /opt/homebrew/lib/python3.9/site-packages/matplotlib/axes/_axes.py in plot(self, scalex, scaley, data, *args, **kwargs) 1603 """ 1604 kwargs = cbook.normalize_kwargs(kwargs, mlines.Line2D) -> 1605 lines = [*self._get_lines(*args, data=data, **kwargs)] 1606 for line in lines: 1607 self.add_line(line) /opt/homebrew/lib/python3.9/site-packages/matplotlib/axes/_base.py in __call__(self, data, *args, **kwargs) 313 this += args[0], 314 args = args[1:] --> 315 yield from self._plot_args(this, kwargs) 316 317 def get_next_color(self): /opt/homebrew/lib/python3.9/site-packages/matplotlib/axes/_base.py in _plot_args(self, tup, kwargs, return_kwargs) 499 500 if x.shape[0] != y.shape[0]: --> 501 raise ValueError(f"x and y must have same first dimension, but " 502 f"have shapes {x.shape} and {y.shape}") 503 if x.ndim > 2 or y.ndim > 2: ValueError: x and y must have same first dimension, but have shapes (4876,) and (6001,)
May have been fixed in release 1.6.8. Test to confirm
Related to #612
The simulation was stopped at
t=4875
and this error was raised