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StochSS
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GillesPy2
Modeling toolkit for biochemical simulation
http://gillespy2.readthedocs.io/
GNU General Public License v3.0
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In TauHybrid Python solver, savetimes vector should pop() not slice
#912
briandrawert
closed
1 year ago
0
Cleanup C++ compiler warnings
#911
briandrawert
closed
1 year ago
0
Use SCons instead of Makefiles for compilation of C++ code
#910
briandrawert
closed
1 year ago
0
Release 1.8.0
#909
BryanRumsey
closed
1 year ago
0
Auto update docs
#908
briandrawert
closed
1 year ago
0
build docs on push to develop
#907
briandrawert
closed
1 year ago
0
Docs update testing
#906
briandrawert
closed
1 year ago
0
TauHybridSolver history_length needs to be configurable
#905
briandrawert
closed
1 month ago
0
Why does this take so long to run? Number of Reactions?
#904
mdip226
closed
1 year ago
1
Tauhybridsolver tau selection bugs break opioid model
#903
briandrawert
closed
1 year ago
1
TauHybridSolver tau selection bugs break Opioid model
#902
briandrawert
closed
1 year ago
0
Solver interrupts do not work correctly if run outside of main thread
#901
jtcooper10
closed
1 month ago
0
Events assignment rounding for discrete/continuous species
#900
briandrawert
closed
1 year ago
0
Coverage badge should look at 'main' branch
#899
briandrawert
closed
1 month ago
0
TauHybridSolver gives incorrect value at t=0 (not initial value)
#898
briandrawert
closed
1 year ago
0
Target species of RateRules must be continuous
#897
briandrawert
closed
1 year ago
0
TauHybridSolver does not simulate rate-rule & continuous species model correctly
#896
briandrawert
closed
1 year ago
0
TauHybridCSolver does not simulate RateRule-only model correctly
#895
briandrawert
closed
1 year ago
3
Remove MinGW downgrade from unit tests workflow
#894
jtcooper10
closed
1 year ago
0
Pylintrc file
#893
BryanRumsey
closed
1 year ago
1
Incorrect Errors
#892
BryanRumsey
closed
1 year ago
0
Fixes #874 for TauHybridSolver
#891
briandrawert
closed
1 year ago
1
Fixing packaging for SCons
#890
briandrawert
closed
1 year ago
1
Update README.md
#889
briandrawert
closed
1 year ago
0
Auto docs build
#888
BryanRumsey
closed
1 year ago
0
Github docs aren't updating automatically
#887
BryanRumsey
closed
1 year ago
0
Update documentation
#886
BryanRumsey
closed
1 year ago
0
HOTFIX: SBML Event Assignment
#885
BryanRumsey
closed
2 years ago
0
Bug in EventAssignment for SBML import
#884
vwiela
closed
1 year ago
1
If bad value is passed to Event, throw error
#883
briandrawert
closed
1 month ago
0
didn't realize __ changes __dict__
#882
mdip226
closed
2 years ago
0
Clarify dependencies
#881
BryanRumsey
closed
2 years ago
0
Contradicting error message
#880
vwiela
closed
1 year ago
3
Replace Makefile build back end with SConstruct
#879
jtcooper10
closed
1 year ago
6
HOTFIX: Homo-Dimer Reaction Propensities
#878
BryanRumsey
closed
2 years ago
0
Release v1.7.2
#877
BryanRumsey
closed
1 year ago
0
Reaction.reactants should throw error if species is repeated
#876
briandrawert
closed
1 year ago
0
Tau-Hybrid C solver: # of SSA steps after negative value should be configurable constant
#875
briandrawert
closed
1 month ago
0
Tau-hybrid Non-negative check needs to be refactored
#874
briandrawert
closed
1 year ago
0
Remove deprecated feature for v1.10.0
#873
BryanRumsey
closed
1 month ago
0
Delete `name` from EventAssignment when anonymizing
#872
mdip226
closed
2 years ago
0
HOTFIX: Test Results
#871
BryanRumsey
closed
2 years ago
0
Fixing homo-dimer bimolecular propensity function
#870
briandrawert
closed
2 years ago
3
Problematic results for a simple reversible autocatalytic reaction
#869
PENG-Zhen
closed
2 years ago
0
798 authors and acknowledgments need to be updated
#868
briandrawert
closed
2 years ago
0
Root finding in TauHybridCSolver
#867
briandrawert
closed
2 years ago
0
HOTFIX: ODE C Ensemble Results
#866
BryanRumsey
closed
2 years ago
0
`plot_mean_stdev` does not work for ODECSolver
#865
briandrawert
closed
2 years ago
1
fixed bug where non-negativity was enforced on species that are not i…
#864
briandrawert
closed
2 years ago
0
TauHybridCSolver failes on SimpleHybridModel
#863
briandrawert
closed
2 years ago
0
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