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StochSS / stochss

StochSS - Software as a Service for modeling, simulation, inference and analysis of biochemical models. https://live.stochss.org
http://www.stochss.org
GNU General Public License v3.0
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Stochss compute integration #1412

Closed BryanRumsey closed 1 year ago

BryanRumsey commented 2 years ago

This project will not be ready for review until StochSS-Compute v1.0.0 is released.

briandrawert commented 1 year ago
  1. Add placeholder test to "Region" that says "example: us-east-2"
  2. add link below to "Credentials" header, to here: https://stochss.github.io/stochss-compute/docs/_build/html/tutorials/aws/aws.html#aws-configuration
briandrawert commented 1 year ago

Please replaced "Gitter" with "Discord". This is the invite link: https://discord.gg/QhMeFCJJ

briandrawert commented 1 year ago

We need feedback if "Apply" is clicked on the settings page.

briandrawert commented 1 year ago

I got this error due to a misconfiguration. However, the error was not handled correctly:

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/stochss/stochss/handlers/util/scripts/aws_compute.py", line 119, in <module>
    interact(launch=args.launch, status=args.status, terminate=args.terminate)
  File "/stochss/stochss/handlers/util/scripts/aws_compute.py", line 104, in interact
    base.launch_aws_cluster()
  File "/stochss/stochss/handlers/util/stochss_base.py", line 482, in launch_aws_cluster
    cluster.clean_up()
UnboundLocalError: local variable 'cluster' referenced before assignment
BryanRumsey commented 1 year ago

I got this error due to a misconfiguration. However, the error was not handled correctly:

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/stochss/stochss/handlers/util/scripts/aws_compute.py", line 119, in <module>
    interact(launch=args.launch, status=args.status, terminate=args.terminate)
  File "/stochss/stochss/handlers/util/scripts/aws_compute.py", line 104, in interact
    base.launch_aws_cluster()
  File "/stochss/stochss/handlers/util/stochss_base.py", line 482, in launch_aws_cluster
    cluster.clean_up()
UnboundLocalError: local variable 'cluster' referenced before assignment

Fixed

BryanRumsey commented 1 year ago
  1. Add placeholder test to "Region" that says "example: us-east-2"
  2. add link below to "Credentials" header, to here: https://stochss.github.io/stochss-compute/docs/_build/html/tutorials/aws/aws.html#aws-configuration

Done

BryanRumsey commented 1 year ago

Please replaced "Gitter" with "Discord". This is the invite link: https://discord.gg/QhMeFCJJ

Done

BryanRumsey commented 1 year ago

We need feedback if "Apply" is clicked on the settings page.

Done