Stortebecker / metabolomics

A repo to exchange and discuss metabolomics issues at the ZBSA Freiburg.
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Galaxy metaMSrunGC database and RIinput #2

Open MSchlprt opened 7 years ago

MSchlprt commented 7 years ago

Hey Guys,

by processing GC-MS data (zipped .CDF files) with metaMS.runGC in Galaxy following problems occured.

Workflow included an upload of a database in .MSP and a RI-input file in .CSV All files used are attached database+RI.zip

By uploading all files zipped CDF-files and database as well as RIinput files galaxy error message metamsrungc

By just uploading zipped .CDF files everything works functional (except that I have to adjust settings for deconvolution and peak picking)

best wishes Manu