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Stortebecker / training-material

A collection of training material from offered Galaxy courses
http://stortebecker.github.io/training-material
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Create a Docker image for Galaxy proteomics #4

Open yvanlebras opened 7 years ago

yvanlebras commented 7 years ago

Hi @Stortebecker , just see you repo. I think interested to create such a training-material section. Concerning the Docker related work, maybe I can try to help... I don't have find Galaxy-P flavour, only the bingomics one. What do you think to use this kind of Docker image ? I see that there is issues regarding wine installation....

bgruening commented 7 years ago

@yvanlebras offical flavor is here and needs love: https://github.com/bgruening/docker-galaxyp

yvanlebras commented 7 years ago

Thanks @bgruening ! And I see there is ongoing hard work on proteomics tools... I have to give more love definitely ! Not sure why I don't find this flavour on Docker hub directly.....

Stortebecker commented 7 years ago

Hi @yvanlebras ! Nice to see you here, I am happy about any help. Sooo much to do, so little time.

Stortebecker commented 7 years ago

@blankclemens @bgruening Wouldn't it make sense to create only one docker flavor for all of my GalaxyP material (tutorials and workflows)? I think this makes more sense than creating docker containers for each of them, because I followed the "modular tutorial" idea. Hereby I mean that the tutorials are not so helpful on their own, but only in combination with each other (e.g. the ProteinID builds up on the DatabaseHandling, ProteinQuant_SIL builds up on the ProteinID).

I guess the resultng docker container would still be not too large.

blankclemens commented 7 years ago

Mmh, that's exactly what this https://github.com/bgruening/docker-galaxyp image is for? ;-) Quoting: "offical flavor is here and needs love".

Stortebecker commented 7 years ago

I don't know. Maybe? I understood this more as a collection of all proteomics tools in Galaxy. Isn`t it part of the GTN masterplan that each tutorial has its own docker container?