MiNA (Mitochondrial Network Analysis) is a project aimed at making the analysis and characterization of mitochondrial network morphology more accurate, faster, and objective. This project currently consists of a set of Python scripts (and JAVA for the user interface) for the Fiji distribution of ImageJ.
Mitochondrial footprint output is inaccurate when 3D stacks don't have padding. This bug is being fixed and will be solved in the new release of MiNA.