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StuartLab / MiNA

MiNA (Mitochondrial Network Analysis) is a project aimed at making the analysis and characterization of mitochondrial network morphology more accurate, faster, and objective. This project currently consists of a set of Python scripts (and JAVA for the user interface) for the Fiji distribution of ImageJ.
GNU General Public License v3.0
26 stars 8 forks source link

Error #32

Closed kaccfite closed 3 years ago

kaccfite commented 3 years ago

Hi, I try to run the MiNA, But I failed everytime Could you help me to figure out this problem? Thank you!

[INFO] Reading available sites from https://imagej.net/ [ERROR] Traceback (most recent call last): File "Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py", line 20, in ImportError: compiled unit contains version 37 code (38 required): C:\Yanqiao Lu store\fiji-win64\Fiji.app\jars\Lib\eztables__init__$py.class

at org.python.core.Py.ImportError(Py.java:329)
at org.python.core.imp.readCodeData(imp.java:396)
at org.python.core.imp.createFromPyClass(imp.java:284)
at org.python.core.imp.loadFromSource(imp.java:951)
at org.python.core.imp.find_module(imp.java:769)
at org.python.core.imp.import_next(imp.java:1158)
at org.python.core.imp.import_module_level(imp.java:1350)
at org.python.core.imp.importName(imp.java:1528)
at org.python.core.ImportFunction.__call__(__builtin__.java:1285)
at org.python.core.PyObject.__call__(PyObject.java:433)
at org.python.core.__builtin__.__import__(__builtin__.java:1232)
at org.python.core.imp.importOne(imp.java:1547)
at org.python.pycode._pyx0.f$0(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py:291)
at org.python.pycode._pyx0.call_function(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:157)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

[ERROR] Traceback (most recent call last): File "Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py", line 20, in ImportError: compiled unit contains version 37 code (38 required): C:\Yanqiao Lu store\fiji-win64\Fiji.app\jars\Lib\eztables__init__$py.class

at org.python.core.Py.ImportError(Py.java:329)
at org.python.core.imp.readCodeData(imp.java:396)
at org.python.core.imp.createFromPyClass(imp.java:284)
at org.python.core.imp.loadFromSource(imp.java:951)
at org.python.core.imp.find_module(imp.java:769)
at org.python.core.imp.import_next(imp.java:1158)
at org.python.core.imp.import_module_level(imp.java:1350)
at org.python.core.imp.importName(imp.java:1528)
at org.python.core.ImportFunction.__call__(__builtin__.java:1285)
at org.python.core.PyObject.__call__(PyObject.java:433)
at org.python.core.__builtin__.__import__(__builtin__.java:1232)
at org.python.core.imp.importOne(imp.java:1547)
at org.python.pycode._pyx1.f$0(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py:291)
at org.python.pycode._pyx1.call_function(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:157)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

[ERROR] Traceback (most recent call last): File "Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py", line 20, in ImportError: compiled unit contains version 37 code (38 required): C:\Yanqiao Lu store\fiji-win64\Fiji.app\jars\Lib\eztables__init__$py.class

at org.python.core.Py.ImportError(Py.java:329)
at org.python.core.imp.readCodeData(imp.java:396)
at org.python.core.imp.createFromPyClass(imp.java:284)
at org.python.core.imp.loadFromSource(imp.java:951)
at org.python.core.imp.find_module(imp.java:769)
at org.python.core.imp.import_next(imp.java:1158)
at org.python.core.imp.import_module_level(imp.java:1350)
at org.python.core.imp.importName(imp.java:1528)
at org.python.core.ImportFunction.__call__(__builtin__.java:1285)
at org.python.core.PyObject.__call__(PyObject.java:433)
at org.python.core.__builtin__.__import__(__builtin__.java:1232)
at org.python.core.imp.importOne(imp.java:1547)
at org.python.pycode._pyx2.f$0(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py:291)
at org.python.pycode._pyx2.call_function(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:157)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

[ERROR] Traceback (most recent call last): File "Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py", line 20, in ImportError: compiled unit contains version 37 code (38 required): C:\Yanqiao Lu store\fiji-win64\Fiji.app\jars\Lib\eztables__init__$py.class

at org.python.core.Py.ImportError(Py.java:329)
at org.python.core.imp.readCodeData(imp.java:396)
at org.python.core.imp.createFromPyClass(imp.java:284)
at org.python.core.imp.loadFromSource(imp.java:951)
at org.python.core.imp.find_module(imp.java:769)
at org.python.core.imp.import_next(imp.java:1158)
at org.python.core.imp.import_module_level(imp.java:1350)
at org.python.core.imp.importName(imp.java:1528)
at org.python.core.ImportFunction.__call__(__builtin__.java:1285)
at org.python.core.PyObject.__call__(PyObject.java:433)
at org.python.core.__builtin__.__import__(__builtin__.java:1232)
at org.python.core.imp.importOne(imp.java:1547)
at org.python.pycode._pyx3.f$0(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py:291)
at org.python.pycode._pyx3.call_function(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:157)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

[ERROR] Traceback (most recent call last): File "Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py", line 20, in ImportError: compiled unit contains version 37 code (38 required): C:\Yanqiao Lu store\fiji-win64\Fiji.app\jars\Lib\eztables__init__$py.class

at org.python.core.Py.ImportError(Py.java:329)
at org.python.core.imp.readCodeData(imp.java:396)
at org.python.core.imp.createFromPyClass(imp.java:284)
at org.python.core.imp.loadFromSource(imp.java:951)
at org.python.core.imp.find_module(imp.java:769)
at org.python.core.imp.import_next(imp.java:1158)
at org.python.core.imp.import_module_level(imp.java:1350)
at org.python.core.imp.importName(imp.java:1528)
at org.python.core.ImportFunction.__call__(__builtin__.java:1285)
at org.python.core.PyObject.__call__(PyObject.java:433)
at org.python.core.__builtin__.__import__(__builtin__.java:1232)
at org.python.core.imp.importOne(imp.java:1547)
at org.python.pycode._pyx4.f$0(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py:291)
at org.python.pycode._pyx4.call_function(Plugins/StuartLab/MiNA_Scripts/MiNA_Analyze_Morphology.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:157)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
RodoVJ commented 3 years ago

Please try installing the newest version of MiNA. This his has to be manually installed and cannot be obtained through the update site. Follow the installation instructions of the README of this repository. If you are still having issues after this, delete the StuartLab folder inside Plugins or change the name of StuartLab/MiNA_scripts/MiNA_Analyze_Morphology.py (which is the old version) to something else so you can differentiate between the two.

Hope this helps!

kaccfite commented 3 years ago

Hi, I reinstall the plugin and run it again. Here is another error code. @.***D73601.8D1D8BF0] Could you help me to figure it out? Thank you sooo much! Yanqiao Sent from Mailhttps://go.microsoft.com/fwlink/?LinkId=550986 for Windows 10

From: Rodrigo @.> Sent: Monday, April 12, 2021 8:46 PM To: @.> Cc: @.>; @.> Subject: Re: [StuartLab/MiNA] Error (#32)

Closed #32https://github.com/StuartLab/MiNA/issues/32.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/StuartLab/MiNA/issues/32#event-4585204547, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATS74DPB4ES5QDC56Y4QQ6LTIOH6TANCNFSM42TU5ATA.

RodoVJ commented 3 years ago

Hi, would you mind telling me the steps you're doing that lead you to getting the error message? Also, would that be the complete error message?

kaccfite commented 3 years ago

Yes, that is the complete message. I open an picture first. And then select a cell with rectangle. Then I change the image from 32 bit to 8 bit. Then I run the MiNA Choose the “OK” button without any change. That’s all. I can get a result like this. And with an error code that I showed you before. @.***D7360C.6A9C61E0]

发送自 Windows 10 版邮件https://go.microsoft.com/fwlink/?LinkId=550986应用

发件人: Rodrigo @.> 发送时间: 2021年4月20日 17:32 收件人: @.> 抄送: @.>; @.> 主题: Re: [StuartLab/MiNA] Error (#32)

Hi, would you mind telling me the steps you're doing that lead you to getting the error message? Also, would that be the complete error message?

― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/StuartLab/MiNA/issues/32#issuecomment-823613574, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATS74DLXUDCRAU3KOHOPELDTJXXH5ANCNFSM42TU5ATA.

RodoVJ commented 3 years ago

Which version of MiNA are you using? What does the user interface look like? Also, do you still get the error if you don't convert to 8-bit?

kaccfite commented 3 years ago

@.D73616.53B15530] @.D73616.53B15530] Oh, I found that when I change the image to 16 bit, there was no any error code. And the picture looks better. Thank you so much! By the way, Is this the latest version?

发送自 Windows 10 版邮件https://go.microsoft.com/fwlink/?LinkId=550986应用

发件人: Rodrigo @.> 发送时间: 2021年4月20日 18:05 收件人: @.> 抄送: @.>; @.> 主题: Re: [StuartLab/MiNA] Error (#32)

Which version of MiNA are you using? What does the user interface look like? Also, do you still get the error if you don't convert to 8-bit?

― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/StuartLab/MiNA/issues/32#issuecomment-823629866, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATS74DJMW7BGD5U3KKA7MXLTJX3DRANCNFSM42TU5ATA.

RodoVJ commented 3 years ago

No worries! This is the latest version of MiNA. It should have a user interface with more options and allow you to visualize preprocessing steps such as filters.

kaccfite commented 3 years ago

Thank you! You are so nice! Have a good day! Yanqiao

发送自 Windows 10 版邮件https://go.microsoft.com/fwlink/?LinkId=550986应用

发件人: Rodrigo @.> 发送时间: 2021年4月20日 19:11 收件人: @.> 抄送: @.>; @.> 主题: Re: [StuartLab/MiNA] Error (#32)

No worries! This is the latest version of MiNAhttps://github.com/StuartLab/MiNA/releases/tag/3.0.0. It should have a user interface with more options and allow you to visualize preprocessing steps such as filters.

― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/StuartLab/MiNA/issues/32#issuecomment-823659590, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATS74DLMXOCKHVCDOUMIIOLTJYCZPANCNFSM42TU5ATA.

kaccfite commented 3 years ago

I just need to download the zip file and replace the old one in different folds, right?

发送自 Windows 10 版邮件https://go.microsoft.com/fwlink/?LinkId=550986应用

发件人: Rodrigo @.> 发送时间: 2021年4月20日 19:11 收件人: @.> 抄送: @.>; @.> 主题: Re: [StuartLab/MiNA] Error (#32)

No worries! This is the latest version of MiNAhttps://github.com/StuartLab/MiNA/releases/tag/3.0.0. It should have a user interface with more options and allow you to visualize preprocessing steps such as filters.

― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/StuartLab/MiNA/issues/32#issuecomment-823659590, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATS74DLMXOCKHVCDOUMIIOLTJYCZPANCNFSM42TU5ATA.

RodoVJ commented 3 years ago

That's right. Here are the installation instructions that explain it more in detail. Although I think you might already have the latest version.

kaccfite commented 3 years ago

Thank you!!!!

发送自 Windows 10 版邮件https://go.microsoft.com/fwlink/?LinkId=550986应用

发件人: Rodrigo @.> 发送时间: 2021年4月20日 19:45 收件人: @.> 抄送: @.>; @.> 主题: Re: [StuartLab/MiNA] Error (#32)

That's right. Here are the installation instructionshttps://github.com/StuartLab/MiNA#installation that explain it more in detail. Although I think you might already have the latest version.

― You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/StuartLab/MiNA/issues/32#issuecomment-823671099, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ATS74DKLWTPIRATRMAHEU7DTJYGYHANCNFSM42TU5ATA.