Open andrewsu opened 7 years ago
CCLE data set is loaded in BioGPS is loaded here: http://biogps.org/dataset/E-GEOD-36133/expression-data-from-the-cancer-cell-line-encyclop/
But the sample metadata table only has these columns: Sample, HISTOLOGY SUBTYPE1, HISTOLOGY, PRIMARY SITE
From the raw metadata file at Array express (http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36133/E-GEOD-36133.sdrf.txt) need to add column 4 for "Comment [Sample_title]", which is the cell line name.
CCLE data set is loaded in BioGPS is loaded here: http://biogps.org/dataset/E-GEOD-36133/expression-data-from-the-cancer-cell-line-encyclop/
But the sample metadata table only has these columns: Sample, HISTOLOGY SUBTYPE1, HISTOLOGY, PRIMARY SITE
From the raw metadata file at Array express (http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-36133/E-GEOD-36133.sdrf.txt) need to add column 4 for "Comment [Sample_title]", which is the cell line name.