search

SuLab / biogps_dataset

BioGPS.org dataset & dataset loading code repository
http://biogps.org/
0 stars 2 forks source link

loading error for "E-GEOD-26688" #2

Open JTFouquier opened 8 years ago

JTFouquier commented 8 years ago 
#!python

[INFO, L:57] -process experiment E-GEOD-26688-
[INFO, L:138] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:152] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/arrays.txt
[INFO, L:160] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.hyb.sdrf.txt
[INFO, L:160] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.seq.sdrf.txt
[INFO, L:202] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/E-GEOD-26688
[INFO, L:219] sample file exists
[INFO, L:69] write database
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 399, in execute_from_command_line
    utility.execute()
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 392, in execute
    self.fetch_command(subcommand).run_from_argv(self.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 242, in run_from_argv
    self.execute(*args, **options.__dict__)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 285, in execute
    output = self.handle(*args, **options)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 103, in handle
    ds_matrix = np.array(data_matrix.values(), np.float32)
ValueError: setting an array element with a sequence.
JTFouquier commented 8 years ago

sample files have different reporters

Original comment by: jin_xuefeng