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SuLab / biogps_dataset

BioGPS.org dataset & dataset loading code repository
http://biogps.org/
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loading error for "E-GEOD-38516" #3

Open JTFouquier opened 8 years ago

JTFouquier commented 8 years ago 
#!python

[INFO, L:74] -process experiment E-GEOD-38516-
[INFO, L:155] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:169] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/arrays.txt
[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.hyb.sdrf.txt
[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.seq.sdrf.txt
[INFO, L:219] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/E-GEOD-38516
[INFO, L:232] get sample file: http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38516/E-GEOD-38516.processed.1.zip
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 399, in execute_from_command_line
    utility.execute()
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 392, in execute
    self.fetch_command(subcommand).run_from_argv(self.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 242, in run_from_argv
    self.execute(*args, **options.__dict__)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 285, in execute
    output = self.handle(*args, **options)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 84, in handle
    data_matrix = setup_dataset(e)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 268, in setup_dataset
    splited[i] = float(splited[i])
IndexError: list index out of range
JTFouquier commented 8 years ago

AFFX-CreX-5_at 49.33694 A 0.27417 AFFX-CreX-3_at 50.53662 A 0.171387 AFFX-r2-Hs18SrRNA-3_s_at
AFFX-r2-Hs18SrRNA-5_at
AFFX-r2-Hs18SrRNA-M_x_at
AFFX-r2-Hs28SrRNA-3_at
AFFX-r2-Hs28SrRNA-5_at
AFFX-r2-Hs28SrRNA-M_at

Original comment by: jin_xuefeng

JTFouquier commented 8 years ago

last several reporter no data

Original comment by: jin_xuefeng

JTFouquier commented 8 years ago

ignore these reporters

Original comment by: jin_xuefeng