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SuLab / scheduled-bots

GeneWiki Scheduled Bots
MIT License
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Changes to Gene Bot #2

Closed stuppie closed 7 years ago

stuppie commented 7 years ago

Fix HGNC symbols bitbucket issue Example mygene.info Issue is mygene.info has incorrect values in the symbol field for certain genes. I don't know where these come from. Fix: If an entry doesn't have a "HGNC" field, the "symbol" field won't be used.

Add chromosome items as qualifier to genomic positions Needed for wikigenomes

Add genome assembly as qualifier to chromosome Issue: It is possible that a gene is located on two different chromosome in two different builds example mygene.info These genes need two chromosome statements, qualify using genome assembly

Some genes are missing chromosome Example mygene.info Issue: mygene.info has an alternative chromosome identifier specified. Fix: The identifier mapping is located here (for human). The chromosome should be added to the item, along with the RefSeq-Accn

miscellaneous things to handle This gene has multiple genomic positions: http://mygene.info/v3/gene/8924 Gene on multiple chromosomes: https://mygene.info/v3/gene/150786

stuppie commented 7 years ago

Alternative chromosome identifiers: http://mygene.info/v3/gene/2952?fields=genomic_pos,genomic_pos_hg19