Gene disease bot fails - Githubissues

SuLab / scheduled-bots

GeneWiki Scheduled Bots

MIT License

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Gene disease bot fails #35

Closed andrawaag closed 5 years ago

andrawaag commented 5 years ago

The Gene Disease Bot just failed. (log).

The reason given is KeyError: 'item' Build step 'Execute shell' marked build as failure Archiving artifacts

This is consistent with a shex bot I am currently developing. In that bot I fixed it by storing the SPARQL results as pandas dataframes. I need to figure out if this should be the sollution here as well, but given it failes on scheduled bots, it might make sense to address it in WDI.

andrawaag commented 5 years ago

Worked again, when I tried to debug. I suspect a temp issue with the SPARQL endpoint. Can't reproduce so close for now.