search

SuLab / scheduled-bots

GeneWiki Scheduled Bots
MIT License
9 stars 15 forks source link

Jenkins/scheduled-bot cleanup needed #55

Closed andrawaag closed 4 years ago

andrawaag commented 4 years ago

Both the microbial and mammalian Genebots are consolidated into a single bot.
Both the geneprotein folder in scheduled-bots and jenkins requires some reordering to make this more visible. Also before this consolidation of genebots, multiple bots on mammalian genes, e.g. rat and mouse ran, which don't run now. They need to resume, to maintain the content already added.

andrewsu commented 4 years ago

@andrawaag You say that we have "multiple bots on mammalian genes, e.g. rat and mouse ran, which don't run now" but need to be resumed. But what do those bots do that the single consolidated bot does not?

andrawaag commented 4 years ago

They differ on specific properties. e.g. Rat and Mouse gene items are maintained with MGI identifiers. The question is if these should be added to the consolidated bot code, or the bot needs to be rewritten so that there is a core gene library with again distinct code bases per species, where each import the generic gene bot code base

andrawaag commented 4 years ago

I am going to close this issue and move to different issues