DeepHistone CNN model

[TaoDFang]

Here i would like to use similar model as mention in DeepHistone paper Input would be DNA sequence (one hot encode ) and histone marks

their code here: https://github.com/QijinYin/DeepHistone

[TaoDFang]

Pytorch DataLoader tutorial: https://pytorch.org/tutorials/beginner/basics/data_tutorial.html

when build DNN model in Pytorch, built independent block atinit function and assembly them in forward function

pytorch tutorial: https://pytorch.org/tutorials/beginner/basics/quickstart_tutorial.html

Summary of One layer CNN: https://www.coursera.org/learn/convolutional-neural-networks/lecture/nsiuW/one-layer-of-a-convolutional-network

[TaoDFang]

might need to increase histone bin size or decrease seq bin size?

not 30 minutes for each epoch, can reduce training size for debuging reason

[TaoDFang]

test histone mark now but with very small bin size for example 1

[TaoDFang]

change chromosome splitting as well