Thanks for the great tools. As I upgrated wgdi to 0.6.4, the error occured. I supposed it may due to that I use a remote sge server without the support of interactive backend. Could please give me some suggestions how to handle the problem? Many thanks!
$ wgdi -d conf.dot
blast = pame.pep.dia
gff1 = pame.gff
gff2 = pame.gff
lens1 = pame.len
lens2 = pame.len
genome1_name = pame
genome2_name = pame
multiple = 1
score = 100
evalue = 1e-5
repeat_number = 10
position = end
blast_reverse = false
ancestor_left = none
ancestor_top = none
markersize = 0.5
figsize = 10,10
savefig = dot.pdf
Traceback (most recent call last):
File "/export/home/ydn/.conda/envs/yty/bin/wgdi", line 8, in <module>
sys.exit(main())
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/wgdi/run.py", line 163, in main
module_to_run(arg, value)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/wgdi/run.py", line 122, in module_to_run
run_subprogram(program, conf, name)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/wgdi/run.py", line 87, in run_subprogram
r.run()
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/wgdi/dotplot.py", line 92, in run
fig, ax = plt.subplots(figsize=self.figsize)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/matplotlib/cbook/deprecation.py", line 451, in wrapper
return func(*args, **kwargs)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/matplotlib/pyplot.py", line 1288, in subplots
fig = figure(**fig_kw)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/matplotlib/pyplot.py", line 694, in figure
**kwargs)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/matplotlib/pyplot.py", line 316, in new_figure_manager
return _backend_mod.new_figure_manager(*args, **kwargs)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/matplotlib/backend_bases.py", line 3494, in new_figure_manager
return cls.new_figure_manager_given_figure(num, fig)
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/site-packages/matplotlib/backends/_backend_tk.py", line 885, in new_figure_manager_given_figure
window = tk.Tk(className="matplotlib")
File "/export/home/ydn/.conda/envs/yty/lib/python3.7/tkinter/__init__.py", line 2023, in __init__
self.tk = _tkinter.create(screenName, baseName, className, interactive, wantobjects, useTk, sync, use)
_tkinter.TclError: couldn't connect to display "localhost:21.0"
Hi dear developer,
Thanks for the great tools. As I upgrated wgdi to 0.6.4, the error occured. I supposed it may due to that I use a remote sge server without the support of interactive backend. Could please give me some suggestions how to handle the problem? Many thanks!