Closed cfz1998 closed 5 months ago
Hi.@SunPengChuan
My collinear file has 40,528 gene pairs. Why does the result Ks file have only 23,960 gene pairs?
[ks] cds_file = all.cds.fa #cat all cds files together pep_file = all.pep.fa #cat all pep files together align_software = mafft pairs_file = A_A.collinear ks_file = A_A.ks
A_A.collinear: 40,528 gene pairs A_A.ks: 23,960 gene pairs
Two genes (gene1 vs gene2) of the same species are equivalent to (gene2 vs gene1), thus eliminating numerous distinct combinations.
Thank you for your reply!
Hi.@SunPengChuan
My collinear file has 40,528 gene pairs. Why does the result Ks file have only 23,960 gene pairs?
A_A.collinear: 40,528 gene pairs A_A.ks: 23,960 gene pairs