Open erika-r-moore opened 3 months ago
I just tested it, and a single chromosome indeed causes an error, which appears to be a bug. I'll be traveling for the next couple of days and won't be able to modify the code. You can analyze two chromosomes instead. Even if you list the same chromosome twice in the lens file, it will still run correctly.
Hello!
I am trying to run the "retain" function (-r), but keep getting this error:
The csv file is made (attached) but the image is not. I have looked at the WGDI read-the-docs website and wgdi-example GitHub, but have not found a solution. My -r code is:
Do you know what the issue may be? Also, am I doing the right gff and lens files? The gff designated is the full gff file (contains all chromosomes of the reference), while the -EDIT.lens file only includes one chromosome of interest (chr11). I can provide the code if needed.
Let me know and thanks for your help!
Best, Erika
retain_vvi161s-Acicarpha_chr11.csv