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SuperBianC / scMulan

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
MIT License
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CUDA/GPU architecture requirements #1

Open mjstrumillo opened 5 months ago

mjstrumillo commented 5 months ago

hi, can you provide minimum system/GPU/CUDA requirements for installation? My understanding is the model is pre-trained so if no finetuning is required, can the tutorials be run without the GPU support? Thanks!

SuperBianC commented 5 months ago

Yes, it can be run with CPU only, I added settings for using CPU in this tutorial https://github.com/SuperBianC/scMulan/blob/main/Tutorial-cell_type_annotation.ipynb. But only using CPU would be very slow. Using GPUs would be at least 10x faster.