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SuperDARN / rst

Radar Software Toolkit (RST)
https://superdarn.github.io/rst/
GNU General Public License v3.0
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Installation issue #604

Open alok342311 opened 7 months ago

alok342311 commented 7 months ago

Discussion

Having initial problem with installation

I want to use pydarn in my system for polar convection maps, for that I have to convert FITACF to GRID to MAP files... I am trying to install DAWG rst software for that, however I am getting the following error during make.build (I am using the instructions provided on https://radar-software-toolkit-rst.readthedocs.io/en/latest/user_guide/linux_install/#installation)

(base) space@Space:~/rst/build/script$ make.build rm -f *.o make.version /home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/.. make.hdr /home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/../include /home/space/rst/build/include/base /home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/../include/rxml.h '/home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/../include/rxml.h' -> '/home/space/rst/build/include/base/rxml.h' /home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/space/anaconda3/include -fPIC -Wall -pedantic -O3 -D_GNU_SOURCE -D_LINUX -I/home/space/rst/build/include/base -c rxml.c
/home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/space/anaconda3/include -fPIC -Wall -pedantic -O3 -D_GNU_SOURCE -D_LINUX -I/home/space/rst/build/include/base -c call.c
mkdir -p /home/space/rst/build/lib ar -r /home/space/rst/build/lib/librxml.1.8.a rxml.o call.o ar: creating /home/space/rst/build/lib/librxml.1.8.a /home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-ld -shared -lm -lz -o /home/space/rst/build/lib/librxml.1.8.so \ rxml.o call.o -Bstatic -L/home/space/rst/build/lib
/home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lz make: *** [/home/space/rst/build/make/makelib.linux:25: rxml] Error 1

alok342311 commented 7 months ago

please help

JWiker commented 7 months ago

Hi @alok342311 - have you confirmed that zlib is installed? If it is, is it also part of your LD_LIBRARY_PATH?

alok342311 commented 7 months ago

Hello @JWiker .... thanks for your reply... the following massage I am getting for zlib1g ... I do not use linux frequently, I appreciate your guidance..... which path should I export for LD_LIBRARY_PATH

(base) space@Space:~$ dpkg -L zlib1g /. /lib /lib/x86_64-linux-gnu /lib/x86_64-linux-gnu/libz.so.1.2.11 /(base) space@Space:~$ dpkg -L zlib1g /. /lib /lib/x86_64-linux-gnu /lib/x86_64-linux-gnu/libz.so.1.2.11 /usr /usr/share /usr/share/doc /usr/share/doc/zlib1g /usr/share/doc/zlib1g/changelog.Debian.gz /usr/share/doc/zlib1g/copyright /lib/x86_64-linux-gnu/libz.so.1 usr /usr/share /usr/share/doc /usr/share/doc/zlib1g /usr/share/doc/zlib1g/changelog.Debian.gz /usr/share/doc/zlib1g/copyright /lib/x86_64-linux-gnu/libz.so.1

JWiker commented 7 months ago

Try export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/lib/x86_64-linux-gnu - I think that should work since that's where the actual shared library files are located

alok342311 commented 7 months ago

It is showing the same error....

(base) space@Space:~/rst/build/script$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/lib/x86_64-linux-gnu (base) space@Space:~/rst/build/script$ make.build /bin/bash: /home/space/anaconda3/lib/libtinfo.so.6: no version information available (required by /bin/bash) rm -f *.o make.version /home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/.. make.hdr /home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/../include /home/space/rst/build/include/base /home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/../include/rxml.h '/home/space/rst/codebase/base/src.lib/xml/xml.1.8/src/../include/rxml.h' -> '/home/space/rst/build/include/base/rxml.h' /home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/space/anaconda3/include -fPIC -Wall -pedantic -O3 -D_GNU_SOURCE -D_LINUX -I/home/space/rst/build/include/base -c rxml.c
/home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/space/anaconda3/include -fPIC -Wall -pedantic -O3 -D_GNU_SOURCE -D_LINUX -I/home/space/rst/build/include/base -c call.c
mkdir -p /home/space/rst/build/lib ar -r /home/space/rst/build/lib/librxml.1.8.a rxml.o call.o ar: creating /home/space/rst/build/lib/librxml.1.8.a /home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-ld -shared -lm -lz -o /home/space/rst/build/lib/librxml.1.8.so \ rxml.o call.o -Bstatic -L/home/space/rst/build/lib
/home/space/anaconda3/bin/x86_64-conda_cos6-linux-gnu-ld: cannot find -lz make: *** [/home/space/rst/build/make/makelib.linux:25: rxml] Error 1