Open Alajmi0 opened 3 years ago
I am fairly new to image registration by SimpleITK , and I have installed from sources the SimpleITK package on Python3 macOs
I am trying to register three images fixed( T1) , moving ( CT) and third image ( PET).
here is the part of the code:
`## Load fixed and moving image data fixedImage = sitk.ReadImage(FIXED_IMAGE_NAME,sitk.sitkUInt8) movingImage = sitk.ReadImage(MOVING_IMAGE_NAME,sitk.sitkUInt8) sitk.Cast(fixedImage, sitk.sitkUInt8)
elastixImageFilter = sitk.ElastixImageFilter() elastixImageFilter.SetFixedImage(fixedImage) elastixImageFilter.SetMovingImage(movingImage)
try: if FIXED_IMAGE_MASK_NAME != None and FIXED_IMAGE_MASK_NAME != "":
elastixImageFilter.SetFixedMask(sitk.ReadImage(FIXED_IMAGE_MASK_NAME,sitk.sitkUInt8))
elastixImageFilter.SetParameterMap(parameterMap_rigid)
try: thirdImage = sitk.ReadImage(THIRD_IMAGE_NAME,sitk.sitkUInt8)
transformix = sitk.TransformixImageFilter() transformix.SetTransformParameterMap(transformParameterMap) transformix.SetMovingImage(thirdImage) transformix.Execute()`
I got
sitk::ERROR: Fixed mask must be of pixel type sitkUInt8 but fixed mask 0 is of type "16-bit signed integer". Cast with SimpleITK.Cast(mask, sitk.sitkUInt8).
I am fairly new to image registration by SimpleITK , and I have installed from sources the SimpleITK package on Python3 macOs
I am trying to register three images fixed( T1) , moving ( CT) and third image ( PET).
here is the part of the code:
`## Load fixed and moving image data fixedImage = sitk.ReadImage(FIXED_IMAGE_NAME,sitk.sitkUInt8) movingImage = sitk.ReadImage(MOVING_IMAGE_NAME,sitk.sitkUInt8) sitk.Cast(fixedImage, sitk.sitkUInt8)
Execute elastix registration
elastixImageFilter = sitk.ElastixImageFilter() elastixImageFilter.SetFixedImage(fixedImage) elastixImageFilter.SetMovingImage(movingImage)
try: if FIXED_IMAGE_MASK_NAME != None and FIXED_IMAGE_MASK_NAME != "":
elastixImageFilter.SetParameterMap(parameterMap_rigid)
try: thirdImage = sitk.ReadImage(THIRD_IMAGE_NAME,sitk.sitkUInt8)
I got
Can you please direct me where is my problem here?