SuperElastix / SimpleElastix

Multi-lingual medical image registration library
http://simpleelastix.github.io
Apache License 2.0
507 stars 149 forks source link

Odd colour grading in image after running transformix #458

Open phillipmuza opened 2 years ago

phillipmuza commented 2 years ago

A slight none issue... but after running transformix on the ABA ccf v3 annotation file (first image) the resulting transformed image has a totally different colour grading (second image). I'm using Fiji to view the images and I've tried changing the LUT but nothing changes. Any ideas how to change this behaviour? Thanks!

image

image