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Superzchen / iLearnPlus

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
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Pop out errors #6

Closed Xshelton closed 3 years ago

Xshelton commented 3 years ago

sometimes when dealing with seq fasta data, it will pop out'RG' , sometimes "divided by zero“, sometimes just pop out error(with no responding). How to fix the problem if I come across with errors like that? thanks in advance.

Superzchen commented 3 years ago

sometimes when dealing with seq fasta data, it will pop out'RG' , sometimes "divided by zero“, sometimes just pop out error(with no responding). How to fix the problem if I come across with errors like that? thanks in advance.

Can you send your seq fasta file to me, so as I can check what is the problem?

Xshelton commented 3 years ago

sure, How could I sent you the profile?

Superzchen commented 3 years ago

sure, How could I sent you the profile?

you can sent the file to my mailbox (zhenchen625@hotmail.com)

Xshelton commented 3 years ago

Sure, I have sent it to you. Thanks in advance.

Superzchen commented 3 years ago

sent it to you. Thank

Hi, I have tested you file, and I found that some sequence in your file only have one character (e.g. ZNF391). In this case, some feature extraction methods like z_curve 12 bits will report a mistake and can not calculate the features. To solve this problem, the best way is to remove these sequences in you file.

Xshelton commented 3 years ago

Thank you so much, I have set a threshold to the length of the sequence, it works out now. Thank you again for your help.