Removed from CRAN

[Swarchal]

Removed due to failing on esteemed Prof's computer, but cannot be replicated elsewhere...

 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(platetools)
  > 
  > test_check("platetools")
   ----------- FAILURE REPORT -------------- 
   --- failure: the condition has length > 1 ---
   --- srcref --- 
  : 
   --- package (from environment) --- 
  platetools
   --- call from context --- 
  fill_plate(df_missing, df_missing$wells)
   --- call from argument --- 
  if (well %in% colnames(df) == FALSE) {
      stop(paste(well, "is not a column in", substitute(df)), call. = FALSE)
  }
   --- R stacktrace ---
  where 1: fill_plate(df_missing, df_missing$wells)
  where 2: eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  where 3: withCallingHandlers({
      code
      NULL
  }, error = function(cnd) {
      if (can_entrace(cnd)) {
          cnd <- cnd_entrace(cnd)
      }
      return_from(env, cnd)
  })
  where 4: .capture(act$val <- eval_bare(quo_get_expr(.quo), quo_get_env(.quo)), 
      ...)
  where 5: quasi_capture(enquo(object), label, capture_error, entrace = TRUE)
  where 6 at testthat/test-fill_plate.R#11: expect_error(fill_plate(df_missing, df_missing$wells))
  where 7: eval(code, test_env)
  where 8: eval(code, test_env)
  where 9: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 10: doTryCatch(return(expr), name, parentenv, handler)
  where 11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 12: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 13: doTryCatch(return(expr), name, parentenv, handler)
  where 14: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 15: tryCatchList(expr, classes, parentenv, handlers)
  where 16: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 17: test_code(desc, code, env = parent.frame())
  where 18 at testthat/test-fill_plate.R#10: test_that("returns error when expected", {
      expect_error(fill_plate(df_missing, df_missing$wells))
      expect_error(fill_plate("not_a_df", "string"))
      expect_error(fill_plate(df_missing, "wells", plate = 1))
      expect_error(fill_plate(df_missing, "not_in"))
  })
  where 19: eval(code, test_env)
  where 20: eval(code, test_env)
  where 21: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 22: doTryCatch(return(expr), name, parentenv, handler)
  where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 24: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 25: doTryCatch(return(expr), name, parentenv, handler)
  where 26: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 27: tryCatchList(expr, classes, parentenv, handlers)
  where 28: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 29: test_code(NULL, exprs, env)
  where 30: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
  where 31: force(code)
  where 32: doWithOneRestart(return(expr), restart)
  where 33: withOneRestart(expr, restarts[[1L]])
  where 34: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 35: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, 
      {
          reporter$start_file(basename(path))
          lister$start_file(basename(path))
          source_file(path, new.env(parent = env), chdir = TRUE, 
              wrap = wrap)
          reporter$.end_context()
          reporter$end_file()
      })
  where 36: FUN(X[[i]], ...)
  where 37: lapply(paths, test_file, env = env, reporter = current_reporter, 
      start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
  where 38: force(code)
  where 39: doWithOneRestart(return(expr), restart)
  where 40: withOneRestart(expr, restarts[[1L]])
  where 41: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 42: with_reporter(reporter = current_reporter, results <- lapply(paths, 
      test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, 
      load_helpers = FALSE, wrap = wrap))
  where 43: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 44: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, 
      ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, 
      wrap = wrap)
  where 45: test_package_dir(package = package, test_path = test_path, filter = filter, 
      reporter = reporter, ..., stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 46: test_check("platetools")

   --- value of length: 86 type: logical ---
   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
   --- function from context --- 
  function (df, well, plate = 96) 
  {
      if (!is.character(well)) {
          stop("'well' should be a string of the column name", 
              call. = FALSE)
      }
      if (!is.data.frame(df)) {
          stop("'df' needs to be a dataframe", call. = FALSE)
      }
      accepted_plates <- c(96L, 384L, 1536L)
      if (plate %in% accepted_plates == FALSE) {
          stop("'plate' needs to be either 96, 384 or 1536", call. = FALSE)
      }
      if (well %in% colnames(df) == FALSE) {
          stop(paste(well, "is not a column in", substitute(df)), 
              call. = FALSE)
      }
      well_col <- df[, well]
      complete_plate <- num_to_well(1:plate, plate = plate)
      missing_indices <- which(complete_plate %!in% well_col)
      missing_wells <- complete_plate[missing_indices]
      missing_df <- data.frame(missing_wells)
      names(missing_df) <- eval(substitute(well))
      filled_df <- rbind_fill(df, missing_df)
      return(filled_df)
  }
  <bytecode: 0x68102b0>
  <environment: namespace:platetools>
   --- function search by body ---
  Function fill_plate in namespace platetools has this body.
   ----------- END OF FAILURE REPORT -------------- 
  Fatal error: the condition has length > 1
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests/platetools.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:59.11, 50.97 + 5.11