MILRET muscle version number regexp returning error

Swart-lab / bleties

IES retention analysis from PacBio CCS reads

https://swart-lab.github.io/bleties

MIT License

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MILRET muscle version number regexp returning error #29

Closed gh-ecs closed 2 years ago

gh-ecs commented 2 years ago

Running bleties with the MILRAA option gives:

File "..miniconda3/envs/bleties/lib/python3.7/site-packages/bleties/main.py", line 35, in check_env
    dep_vers['muscle'] = re.search(r"v\S+", dep_vers['muscle']).group(0)
AttributeError: 'NoneType' object has no attribute 'group'

Running the command:

muscle -version

muscle 5.1.linux64 []
Built Feb 24 2022 03:16:15

kbseah commented 2 years ago

Conda env definition file in repo has been updated to use specific Muscle version, and pull request filed for updating recipe on Bioconda (https://github.com/bioconda/bioconda-recipes/pull/34954)