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Swart-lab / bleties

IES retention analysis from PacBio CCS reads
https://swart-lab.github.io/bleties
MIT License
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Order of execution of MILRET #3

Closed gh-ecs closed 4 years ago

gh-ecs commented 4 years ago

It's not clear from the README or program help, whether the normal operation of MILRET should be to provide it with the gff output from MILRAA, or to run it without this - please clarify.

gh-ecs commented 4 years ago

Adding to the previous comment: Would it be possible to extend the GFF3 output with the IES+, IES- and retention scores? I realize it's more and more info being squeezed into the last column, but it's also useful to check these at a glance by hovering the mouse cursor over the annotation in Geneious.

kbseah commented 4 years ago

MILRET can be run with the MILRAA output or third party IES junction annotations. This will be clarified in revamp of the docs.

kbseah commented 4 years ago

Clarified in the documentation, closing this issue