Parallelize IES reporting in fuzzy mode

Swart-lab / bleties

IES retention analysis from PacBio CCS reads

https://swart-lab.github.io/bleties

MIT License

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Open kbseah opened 3 years ago

kbseah commented 3 years ago

Processing of IES candidates in fuzzy mode to get consensus sequence is slow. Speed up with parallelization?

kbseah commented 3 years ago

A simple way to parallelize would be process each contig in a reference separately.

Before doing so need to check that temp files are appropriately handled and do not overwrite each other.

kbseah commented 3 years ago

Other places that could benefit from parallelization: