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SwedishNational7TMRI / 7T_BIDS_organiser

Tools to organise 7T data into BIDS structure
MIT License
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fix BIDS rawdata folder #5

Closed finnlennartsson closed 1 year ago

emilljungberg commented 1 year ago

I will sort this out asap.

finnlennartsson commented 1 year ago

In Axel's code, he used a new BIDS rawdata folder, fixed_rawdata, for the corrected rawdata folder. However, according to the BIDS standard, the rawdata folder should be the BIDS data folder and any corrections can be done in this directly (this is what e.g. dHCP does), or in line with Axel's coding, if the rawdata folder is first renamed rawdata_non_BIDS, then everything is "fixed" into the rawdata folder.

The rawdata_non_BIDS folder can as the last thing be deleted (or as an option saved for debugging).

emilljungberg commented 1 year ago

I agree. That makes more sense. I'll do the easiest solution for now, renaming the folders afterwards.

emilljungberg commented 1 year ago

This has now been changed such that we used temp_rawdata pre-fixes and then rawdata. This is reflected in the config file but should be cleaned up later.