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Sydney-Informatics-Hub / Fastq-to-BAM

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
GNU General Public License v3.0
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No fastqc Module on Gadi #11

Closed DarioS closed 3 years ago

DarioS commented 3 years ago

fastqc_run_parallel.pbs has module load fastqc/0.11.7

$ module load fastqc/0.11.7
ERROR: Unable to locate a modulefile for 'fastqc/0.11.7'

Of course, it is in apps folder. But, the script in its current form doesn't work.

georgiesamaha commented 3 years ago

Module file is now available on Gadi at /apps/Modules/modulefiles/fastqc