Closed nandan75 closed 1 week ago
Tried the following
locate the cache directory using the following command in a terminal:
fc-cache -v
/usr/lib/fontconfig/cache: not cleaning unwritable cache directory
mkdir -p ~/.cache/fontconfig
chmod 755 ~/.cache/fontconfig
Sys.setenv(FONTCONFIG_CACHE = "~/.cache/fontconfig")
This DOES NOT CHANGE the image and solve the problem
This issue is now identified as more of
Pushed changes
Fontconfig error: No writable cache directories
Describe the bug
When the R script
create_phylogeny_And_heatmap.r
is run.
To Reproduce run the step create_phylogeny_And_Heatmap_image.nf
Expected behavior Expected The plot
combined_plot_mqc.png
is created however issues with labelsScreenshots If applicable, add screenshots to help explain your problem.
Environment (please complete the following information):
Additional context Screenshot 1 : Is expected image as generated outside nextflow (bash pipeline) Screenshot 2 : As generated in nextflow
The datasets (species) are different- so please do not compare the heatmaps :-)
Both images used the same create_phylogeny_And_heatmap.r script