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Sydney-Informatics-Hub / RNASeq-DE

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trimmed fastqc make input bugs #2

Open georgiesamaha opened 1 year ago

georgiesamaha commented 1 year ago

In make input script:

  1. Log directory variable not defined so mkdir $log fails, needs to be added to script
  2. $in variable not capturing _trimmed.fastq.gz, needs to be edited: 
in=../${dataset}_trimmed/${basename}_trimmed.fastq.gz