search

Sydney-Informatics-Hub / Somatic-ShortV

GNU General Public License v3.0
6 stars 1 forks source link

Inconsistent Directory Structure Expectations #12

Open DarioS opened 2 years ago

DarioS commented 2 years ago

For example, gatk4_getpileupsummaries_make_input.sh has

outdir=../${cohort}_GetPileupSummaries # Parent directory.

but the next step, the contamination calculation, has

pileups=./${cohort}_GetPileupSummaries # Current directory.