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Sydney-Informatics-Hub / Somatic-ShortV

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PON GenomicsDB Import Check Missing File Name #3

Open DarioS opened 3 years ago

DarioS commented 3 years ago 
[ds6924@gadi-login-04 Somatic-ShortV]$ ./gatk4_pon_genomicsdbimport_check.sh ../all4SetsNormal.config
Thu Aug 26 14:36:48 AEST 2021: Checking ./Logs/gatk4_pon_genomicsdbimport for errors, obtaining duration and memory usage per task...
Thu Aug 26 14:38:53 AEST 2021: There are 79 intervals that need to be re-run.
Thu Aug 26 14:38:53 AEST 2021: Writing inputs to ./Inputs/gatk4_genomicsdbimport_missing.inputs

[ds6924@gadi-login-04 Somatic-ShortV]$ ls -lht ./Inputs/gatk4_genomicsdbimport_missing.inputs
ls: cannot access './Inputs/gatk4_genomicsdbimport_missing.inputs': No such file or directory

The file name is actually gatk4_pon_genomicsdbimport_missing.inputs.