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Sydney-Informatics-Hub / xnat-uploader

Command-line tool for batch uploading of DICOMs to XNAT
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StudyDate is missing on some sessions #109

Open spikelynch opened 1 year ago

spikelynch commented 1 year ago

Have reproduced this with 0522 on both DJ and ML's machine, uploading to both the production XNAT and a local Dockerised version

StudyDate is empty on the subject page next to the experiment. The scans upload OK and can be downloaded, but the OHIF viewer doesn't launch, complaining about metadata

spikelynch commented 11 months ago

This seems to be being triggered by a single DICOM which is labelled "doseinfo" and which probably should be being excluded (not a scan, PID)

spikelynch commented 10 months ago

Have added a test for ImageType which rejects DOSE_INFO but this isn't getting all of them (see 0712 on the AILDR server)

spikelynch commented 7 months ago

Found the error on the server logs in /data/xnat/home/logs/restlet.log

2024-04-12 02:30:47,533 [http-nio-8080-exec-8] ERROR org.nrg.xnat.restlet.resources.SubjAssessmentAbst -
java.lang.Exception: Modification of scan modality (xnat:ctScanData to xnat:scScanData) not supported.
        at org.nrg.xnat.restlet.actions.PullSessionDataFromHeaders.call(PullSessionDataFromHeaders.java:125)
        at org.nrg.xnat.restlet.resources.SubjAssessmentResource.handlePut(SubjAssessmentResource.java:510)
        at org.restlet.Finder.handle(Finder.java:359)
        at org.restlet.Filter.doHandle(Filter.java:150)
spikelynch commented 7 months ago

Have changed the script so that it skips DOSE_INFO automatically