SydneyBioX / BIDCell

Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
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Using BidCell output in Xenium Ranger #14

Closed lhoranportelance closed 5 months ago

lhoranportelance commented 5 months ago

Hello! Thank you for developing this tool. We are working to implement BidCell in Xenium data, and have gotten it to run on our samples. We are now looking to run the BidCell output back through Xenium Ranger, in order to have the data viewable in Xenium Explorer and to set up objects within R/Python. Is this something you guys have been able to do, and if so, how? If not, is this something you guys anticipate supporting/have any ideas as to how we could accomplish this?

Thank you!