It is better to include a complete step-by-step guide on how to run the example (the user needs to download the GitHub repository, not just install BidCell via pip).
It is better to include the path of the example params_small_example.yaml; otherwise, I have to check each folder to find it.
https://github.com/SydneyBioX/BIDCell/tree/main/bidcell/example_params
If we can also provide a suggestion on how to run it on a specific GPU, it will benefit our group as well.
CUDA_VISIBLE_DEVICES=3; python example_small.py
https://github.com/SydneyBioX/BIDCell/tree/main/bidcell/example_params
CUDA_VISIBLE_DEVICES=3; python example_small.py
I will keep updating this list.