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SydneyBioX / CiteFuse

CiteFuse:
https://sydneybiox.github.io/CiteFuse/index.html
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Using CiteFuse with MissionBio data #16

Closed mcortes-lopez closed 1 year ago

mcortes-lopez commented 1 year ago

Hi, I was wondering if is possible use CiteFuse with MissionBio data (Protein + DNA)? I tried using my normalized ADT values, however, given that MissionBio does not have RNA, I do not know how can I bypass this requirement for some of the functions. I would like to use the ADT importance feature as well as perform between sample analysis using a CITE-Seq reference. Thanks!

HaniJieunKim commented 1 year ago

Hi @mcortes-lopez

Many thanks for your interest!

You can perform the ADT importance feature by using the importanceADT on your ADT matrix as long as you provide the cell type labels, bypassing the integration step.