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SydneyBioX / scMerge

Statistical approach for removing unwanted variation from multiple single-cell datasets
https://sydneybiox.github.io/scMerge/
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Atlas level integration #38

Closed ConDem94 closed 1 year ago

ConDem94 commented 1 year ago

Hi, where can I find the vignette for atlas level integration of multiple studies, platforms etc?

Also, does scMerge2 perform well for integrating single-cell and single-nucleus datasets together?

Thank you!

Best wishes, Constantinos

YingxinLin commented 1 year ago

Dear Constantinos,

Thank you for your interest in scMerge2. Please find the vignette of scMerge2 in this link: https://sydneybiox.github.io/scMerge/articles/scMerge2.html as well as a workshop tutorial in https://yingxinlin.github.io/scMergeBioc2023/articles/an_intro_to_scMerge2.html

We tested the scMerge2 in integrating single-cell and single-nucleus datasets from MOp before and it performs well.

Best wishes, Yingxin