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SydneyBioX / spicyR

https://sydneybiox.github.io/spicyR/
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getPairwise Failure if fast is FALSE #26

Closed DarioS closed 1 year ago

DarioS commented 1 year ago

If fast is TRUE.

> pairsColocated[1:5, 1:5]
    B cells__B cells Basal CKlow__B cells Endothelial__B cells Fibroblasts__B cells Fibroblasts CD68+__B cells
527             -170                 -170                 -170           -170.00000                -170.000000
345             -170                 -170                 -170           -170.00000                -170.000000
211             -170                 -170                 -170           -170.00000                -170.000000
420             -170                 -170                 -170           -170.00000                -170.000000
326             -170                 -170                 -170             47.86583                   1.221674

If fast is FALSE.

 > str(pairsColocated)
 Named logi [1:435] NA NA NA NA NA NA ...
 - attr(*, "names")= chr [1:435] "527" "345" "211" "420" ...

All other parameters to getPairwise are identical.

nick-robo commented 1 year ago

fast = FALSE has been deprecated.