Include normal samples in Taylor et al.

Syksy / curatedPCaData

Bioconductor R-package: Curated Prostate Cancer Data

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Closed Syksy closed 3 years ago

Syksy commented 3 years ago

Right now our data matrix does not include the normal samples present in https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21032

(prefix 'Prostate normal PAN#### exon')

Needed for example DeMiXt and IsoPure, so they should be included. Right now they are not included by the processing script.

Syksy commented 3 years ago

Normal samples now exist in the gene expression matrix and only need proper names in the clinical IDs (colData-field in MAE-objects).