Xenabrowser mapping not up to date

Syksy / curatedPCaData

Bioconductor R-package: Curated Prostate Cancer Data

Creative Commons Attribution 4.0 International

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Xenabrowser mapping not up to date #35

Closed Syksy closed 2 years ago

Syksy commented 2 years ago

We've been using the xenabrowser's old mapping file; we should be using the latest biomaRt annotated hugo symbols, taking into account the potential aliases while maintaining roughly the correct gene coordinates (for example, a gene symbol might be a legacy name for two different genes in two different chromosomes - the gene shouldn't jump between chromosomes, and roughly stay the same coordinates even after hg19 -> hg38 and other adjustments).

Syksy commented 2 years ago

Latest xenabrowser updates now fix these issues.